MutPrior:An Ensemble Method for Ranking Genes in Cancer
نویسندگان
چکیده
Root cause analysis of cancer as well of design of personalized treatment depends on the ability to prioritize mutated genes in cancer. In this paper, we propose a novel approach ’MutPrior’ to prioritize genes in a given caner. We hypothesize that a gene is important for cancer if it has high functional impact mutations, is strategically important for network stability and has high relevance to the disease. This approach integrates functional impact scores, centrality in gene-gene interaction network and disease relevance scores to prioritize the mutated genes. MutPrior outputs a prioritization of genes which is more actionable than any current approaches. In the process, we do away with the arbitrary cutoffs as well as confusion caused by notions of driverpassenger.
منابع مشابه
SFLA Based Gene Selection Approach for Improving Cancer Classification Accuracy
In this paper, we propose a new gene selection algorithm based on Shuffled Frog Leaping Algorithm that is called SFLA-FS. The proposed algorithm is used for improving cancer classification accuracy. Most of the biological datasets such as cancer datasets have a large number of genes and few samples. However, most of these genes are not usable in some tasks for example in cancer classification....
متن کاملAn Ensemble Classification Model for the Diagnosis of Breast Cancer Using Stacked Generalization
Introduction: Breast cancer is one of the most common types of cancer whose incidence has increased dramatically in recent years. In order to diagnose this disease, many parameters must be taken into consideration and mistakes are possible due to human errors or environmental factors. For this reason, in recent decades, Artificial Intelligence has been used by medical practitioners to diagnose ...
متن کاملAn Ensemble Classification Model for the Diagnosis of Breast Cancer Using Stacked Generalization
Introduction: Breast cancer is one of the most common types of cancer whose incidence has increased dramatically in recent years. In order to diagnose this disease, many parameters must be taken into consideration and mistakes are possible due to human errors or environmental factors. For this reason, in recent decades, Artificial Intelligence has been used by medical practitioners to diagnose ...
متن کاملAn Ensemble Click Model for Web Document Ranking
Annually, web search engine providers spend more and more money on documents ranking in search engines result pages (SERP). Click models provide advantageous information for ranking documents in SERPs through modeling interactions among users and search engines. Here, three modules are employed to create a hybrid click model; the first module is a PGM-based click model, the second module in a d...
متن کاملADABOOST ENSEMBLE ALGORITHMS FOR BREAST CANCER CLASSIFICATION
With an advance in technologies, different tumor features have been collected for Breast Cancer (BC) diagnosis, processing of dealing with large data set suffers some challenges which include high storage capacity and time require for accessing and processing. The objective of this paper is to classify BC based on the extracted tumor features. To extract useful information and diagnose the tumo...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره شماره
صفحات -
تاریخ انتشار 2016